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LINC00578 long intergenic non-protein coding RNA 578 [ Homo sapiens (human) ]

Gene ID: 100505566, updated on 25-Jan-2022

Summary

Official Symbol
LINC00578provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 578provided by HGNC
Primary source
HGNC:HGNC:43807
See related
Ensembl:ENSG00000228221 AllianceGenome:HGNC:43807
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in prostate (RPKM 1.5), esophagus (RPKM 1.4) and 10 other tissues See more
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Genomic context

See LINC00578 in Genome Data Viewer
Location:
3q26.32
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (177441921..177752704)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (177159709..177470492)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9868 Neighboring gene Sharpr-MPRA regulatory region 36 Neighboring gene RN7SK pseudogene 52 Neighboring gene Sharpr-MPRA regulatory region 14869 Neighboring gene Sharpr-MPRA regulatory region 5391 Neighboring gene fibroblast growth factor receptor 3 pseudogene 4 Neighboring gene uncharacterized LOC101928711 Neighboring gene long intergenic non-protein coding RNA 2015

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.
EBI GWAS Catalog
Genome-wide and gene-based association studies of anxiety disorders in European and african american samples.
EBI GWAS Catalog
Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.
EBI GWAS Catalog
Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.
EBI GWAS Catalog

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047568.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026325, AC026355, AC112136, BX101293
    Related
    ENST00000442937.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    177441921..177752704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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