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Gm16701 predicted gene, 16701 [ Mus musculus (house mouse) ]

Gene ID: 100503962, updated on 26-Oct-2024

Summary

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Official Symbol
Gm16701provided by MGI
Official Full Name
predicted gene, 16701provided by MGI
Primary source
MGI:MGI:4439625
See related
AllianceGenome:MGI:4439625
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ln-CR2
Expression
Biased expression in CNS E18 (RPKM 2.9), whole brain E14.5 (RPKM 2.3) and 8 other tissues See more
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Genomic context

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See Gm16701 in Genome Data Viewer
Location:
1 H2.3; 1 74.35 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (166801592..166827299, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (166974023..166999730, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33404 Neighboring gene STARR-seq mESC enhancer starr_02934 Neighboring gene STARR-seq mESC enhancer starr_02935 Neighboring gene STARR-seq mESC enhancer starr_02936 Neighboring gene STARR-seq mESC enhancer starr_02937 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene family with sequence similarity 78, member B Neighboring gene STARR-seq mESC enhancer starr_02940 Neighboring gene predicted gene, 33610 Neighboring gene predicted gene, 33668

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. Li J, et al. PLoS Genet, 2021 Mar. PMID 33760820, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037988.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC119212

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    166801592..166827299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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