U.S. flag

An official website of the United States government


Send to:

Choose Destination

3300002A11Rik RIKEN cDNA 3300002A11 gene [ Mus musculus (house mouse) ]

Gene ID: 100503812, updated on 30-Apr-2024


Official Symbol
3300002A11Rikprovided by MGI
Official Full Name
RIKEN cDNA 3300002A11 geneprovided by MGI
Primary source
See related
Gene type
RefSeq status
Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Biased expression in lung adult (RPKM 3.7), ovary adult (RPKM 1.9) and 5 other tissues See more
Try the new Gene table
Try the new Transcript table

Genomic context

See 3300002A11Rik in Genome Data Viewer
12 E; 12 50.0 cM
Exon count:
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (99307290..99328087)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (99341031..99361828)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene forkhead box N3 Neighboring gene centromere protein W pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100567328-100567481 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100567519-100567702 Neighboring gene predicted gene, 46371 Neighboring gene VISTA enhancer mm12 Neighboring gene STARR-positive B cell enhancer ABC_E1861 Neighboring gene STARR-seq mESC enhancer starr_33022 Neighboring gene STARR-positive B cell enhancer ABC_E7165 Neighboring gene STARR-seq mESC enhancer starr_33023 Neighboring gene STARR-seq mESC enhancer starr_33024 Neighboring gene predicted gene, 51999 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100797804-100797957 Neighboring gene STARR-positive B cell enhancer mm9_chr12:100801158-100801458 Neighboring gene predicted gene, 26839 Neighboring gene predicted gene, 53755

Genomic regions, transcripts, and products


  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a



Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.


  1. NR_166805.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J


  1. NC_000078.7 Reference GRCm39 C57BL/6J

    GenBank, FASTA, Sequence Viewer (Graphics)