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LINC00276 long intergenic non-protein coding RNA 276 [ Homo sapiens (human) ]

Gene ID: 100499171, updated on 17-Sep-2024

Summary

Official Symbol
LINC00276provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 276provided by HGNC
Primary source
HGNC:HGNC:38663
See related
Ensembl:ENSG00000230448 AllianceGenome:HGNC:38663
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00276
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00276 in Genome Data Viewer
Location:
2p24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (14228874..14400958, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (14258614..14431690, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (14368998..14541082, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373438 Neighboring gene uncharacterized LOC124907736 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:13816299-13817207 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:13962357-13963239 Neighboring gene uncharacterized LOC107985854 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52900 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52953 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52989 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52999 Neighboring gene NANOG hESC enhancer GRCh37_chr2:14337206-14337732 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:14371872-14372508 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:14372509-14373144 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:14394929-14395543 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:14395544-14396157 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:14472914-14473113 Neighboring gene RNA, U6 small nuclear 1288, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:14541927-14542484 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:14654042-14654593 Neighboring gene LRAT domain containing 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:14988479-14989049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11184 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:15100270-15101469 Neighboring gene NBAS subunit of NRZ tethering complex Neighboring gene H3K4me1 hESC enhancers GRCh37_chr2:15182798-15183298 and GRCh37_chr2:15183299-15183799 Neighboring gene Sharpr-MPRA regulatory region 966 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:15213063-15213219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:15224708-15225393 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:15225394-15226078 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:15281925-15283124 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:15315340-15315550 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:15399317-15400143 Neighboring gene ribosomal protein S26 pseudogene 18

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103814.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017088, AC064846, BC035112
    Related
    ENST00000418420.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    14228874..14400958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    14258614..14431690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)