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LOC100491436 olfactory receptor 5V1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100491436, updated on 17-Aug-2024

Summary

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Official Symbol
LOC100491436provided by Xenbase
Official Full Name
olfactory receptor 5V1provided by Xenbase
Primary source
Xenbase:XB-GENE-29080687
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (143218457..143222439, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (130789240..130793257, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 14 subfamily AP member 1 Neighboring gene olfactory receptor family 6 subfamily AG member 1 Neighboring gene olfactory receptor family 5 subfamily DR member 1 Neighboring gene olfactory receptor family 5 subfamily DM member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables olfactory receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sensory perception of smell IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
olfactory receptor 5V1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    143218457..143222439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012955875.2 → XP_012811329.1  olfactory receptor 5V1

    UniProtKB/TrEMBL
    A0A8J0SDX0
    Conserved Domains (2) summary
    pfam00001
    Location:40 → 289
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33 → 302
    7tm_4; Olfactory receptor
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials