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C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100483848, updated on 8-Mar-2024

Summary

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Gene symbol
C1GALT1
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
PANDA_008524
See related
Ensembl:ENSAMEG00000016360
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 1 NC_048218.1 (147339419..147373595)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217651.1 (507061..540897)

Chromosome 1 - NC_048218.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109489722 Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene uncharacterized LOC117803747 Neighboring gene uncharacterized LOC117803750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048218.1 Reference ASM200744v2 Primary Assembly

    Range
    147339419..147373595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019800268.2 → XP_019655827.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    G1MD47

  2. XM_034668059.1 → XP_034523950.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    D2HD12, G1MD47

  3. XM_002919817.4 → XP_002919863.2  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    G1MD47
    Conserved Domains (1) summary
    cl21608
    Location:115 → 256
    Galactosyl_T; Galactosyltransferase

  4. XM_019800266.2 → XP_019655825.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    D2HD12, G1MD47
    Related
    ENSAMEP00000017275.2, ENSAMET00000017984.2

  5. XM_019800267.2 → XP_019655826.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    D2HD12, G1MD47

  6. XM_034668056.1 → XP_034523947.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    D2HD12, G1MD47
Nucleotide Protein
Heading Accession and Version

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