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RTCA RNA 3'-terminal phosphate cyclase [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100479171, updated on 8-Mar-2024

Summary

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Gene symbol
RTCA
Gene description
RNA 3'-terminal phosphate cyclase
Locus tag
PANDA_009609
See related
Ensembl:ENSAMEG00000008855
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (69356843..69390663)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217736.1 (247984..281096, complement)

Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene ragulator complex protein LAMTOR5-like Neighboring gene uncharacterized LOC117801021 Neighboring gene dihydrolipoamide branched chain transacylase E2 Neighboring gene cell division cycle 14A Neighboring gene G protein-coupled receptor 88

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-3'-phosphate cyclase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA 3'-terminal phosphate cyclase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048219.1 Reference ASM200744v2 Primary Assembly

    Range
    69356843..69390663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002920776.4 → XP_002920822.1  RNA 3'-terminal phosphate cyclase isoform X1

    UniProtKB/TrEMBL
    D2HFE4
    Conserved Domains (2) summary
    cd00874
    Location:8 → 340
    RNA_Cyclase_Class_II; RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in ...
    pfam01137
    Location:12 → 338
    RTC; RNA 3'-terminal phosphate cyclase

  2. XM_034653975.1 → XP_034509866.1  RNA 3'-terminal phosphate cyclase isoform X1

    UniProtKB/TrEMBL
    D2HFE4
    Related
    ENSAMEP00000009332.2, ENSAMET00000009731.2

  3. XM_034653976.1 → XP_034509867.1  RNA 3'-terminal phosphate cyclase isoform X2

    UniProtKB/TrEMBL
    D2HFE4

  4. XM_011226922.3 → XP_011225224.1  RNA 3'-terminal phosphate cyclase isoform X2

    UniProtKB/TrEMBL
    D2HFE4
    Conserved Domains (2) summary
    cl00288
    Location:1 → 283
    EPT_RTPC-like; This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a ...
    pfam01137
    Location:1 → 281
    RTC; RNA 3'-terminal phosphate cyclase
Nucleotide Protein
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