U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nlgn2a neuroligin 2a [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 100462707, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
nlgn2a
Gene description
neuroligin 2a
See related
Ensembl:ENSGACG00000019935
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 7 NC_053218.1 (9129982..9270269, complement)

Chromosome 7 - NC_053218.1Genomic Context describing neighboring genes Neighboring gene up-regulator of cell proliferation Neighboring gene POP7 homolog, ribonuclease P/MRP subunit Neighboring gene transmembrane protein 256 Neighboring gene transmembrane protein 102

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053218.1 Chromosome 7 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the neuroligin gene family expression and evolution in zebrafish. Rissone A, et al. Dev Dyn, 2010 Feb. PMID 20034102

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in presynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
neuroligin-2a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267665.1 → NP_001254594.1  neuroligin-2a

    See identical proteins and their annotated locations for NP_001254594.1

    Status: PROVISIONAL

    Source sequence(s)
    GQ489222
    UniProtKB/TrEMBL
    D2X2J1
    Related
    ENSGACP00000068173.1, ENSGACT00000043667.1
    Conserved Domains (1) summary
    pfam00135
    Location:59 → 600
    COesterase; Carboxylesterase family

RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053218.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    9129982..9270269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040179583.1 → XP_040035517.1  neuroligin-2a isoform X2

    UniProtKB/TrEMBL
    D2X2J1
    Related
    ENSGACP00000059354.1, ENSGACT00000050272.1
    Conserved Domains (1) summary
    pfam00135
    Location:59 → 600
    COesterase; Carboxylesterase family

  2. XM_040179581.1 → XP_040035515.1  neuroligin-2a isoform X1

    Related
    ENSGACP00000031120.1, ENSGACT00000084668.1
    Conserved Domains (1) summary
    cl21494
    Location:60 → 604
    Abhydrolase; alpha/beta hydrolases

  3. XM_040179582.1 → XP_040035516.1  neuroligin-2a isoform X1

    Conserved Domains (1) summary
    cl21494
    Location:60 → 604
    Abhydrolase; alpha/beta hydrolases

  4. XM_040179584.1 → XP_040035518.1  neuroligin-2a isoform X3

    UniProtKB/TrEMBL
    G3Q8X1
    Conserved Domains (1) summary
    cl21494
    Location:3 → 424
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.