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TBXT T-box transcription factor T [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447944, updated on 3-Apr-2024

Summary

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Gene symbol
TBXT
Gene description
T-box transcription factor T
Locus tag
CR201_G0036923
See related
Ensembl:ENSPPYG00000017163
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See TBXT in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 5 NC_071990.2 (168149066..168159925, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 6 NC_071991.1 (167537588..167548448, complement)

Chromosome 5 - NC_071990.2Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene small nucleolar RNA SNORD45 Neighboring gene uncharacterized LOC129060137 Neighboring gene U6 spliceosomal RNA Neighboring gene proline rich 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mesoderm formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in somitogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor T
Names
T brachyury transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071990.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    168149066..168159925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002817567.5 → XP_002817613.3  T-box transcription factor T isoform X1

  2. XM_054558431.2 → XP_054414406.1  T-box transcription factor T isoform X2

  3. XM_002817568.5 → XP_002817614.1  T-box transcription factor T isoform X3

    UniProtKB/TrEMBL
    A0A2J8T961, A0A2J8T9D2, A0A663DBG6, A0A8I5U440, H2PKU3
    Related
    ENSPPYP00000040827.1
    Conserved Domains (1) summary
    pfam00907
    Location:44 → 219
    T-box; T-box
Nucleotide Protein
Heading Accession and Version

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