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LOC100379976 Uncharacterized LOC100379976 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100379976, updated on 28-Feb-2024

Summary

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Gene symbol
LOC100379976
Gene description
Uncharacterized LOC100379976
See related
Ensembl:ENSXETG00000015490
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (107608177..107644361)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (97653859..97689336)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene small EDRK-rich factor 2 Neighboring gene RAS and EF-hand domain containing 2 Neighboring gene serine incorporator 4 Neighboring gene huntingtin interacting protein K

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ADAMTS-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    107608177..107644361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899217.1 → XP_031755077.1  ADAMTS-like protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A803J5Z0, A0A803K3Z7
    Related
    ENSXETP00000115045.1, ENSXETT00000106337.1
    Conserved Domains (3) summary
    smart00209
    Location:57 → 107
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:220 → 322
    ADAM_spacer1; ADAM-TS Spacer 1
    cl02512
    Location:376 → 479
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  2. XM_002932242.5 → XP_002932288.1  ADAMTS-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A803J5Z0, F7CDC7
    Related
    ENSXETP00000033789.4, ENSXETT00000033789.5
    Conserved Domains (3) summary
    smart00209
    Location:57 → 107
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:220 → 322
    ADAM_spacer1; ADAM-TS Spacer 1
    cl02512
    Location:408 → 511
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
Nucleotide Protein Strain
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