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ect2l epithelial cell transforming 2 like [ Danio rerio (zebrafish) ]

Gene ID: 100332935, updated on 12-Sep-2024

Summary

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Gene symbol
ect2l
Gene description
epithelial cell transforming 2 like
See related
Ensembl:ENSDARG00000091471
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (33389287..33408037, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (33436791..33455623, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene xanthine dehydrogenase Neighboring gene zgc:162964 Neighboring gene coiled-coil domain containing 28A Neighboring gene synaptosome associated protein 23.1 Neighboring gene synaptosome associated protein 23.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
epithelial cell-transforming sequence 2 oncogene-like
Names
epithelial cell transforming sequence 2 oncogene-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    33389287..33408037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009293169.4 → XP_009291444.1  epithelial cell-transforming sequence 2 oncogene-like isoform X1

    See identical proteins and their annotated locations for XP_009291444.1

    UniProtKB/TrEMBL
    A0A8M3ARI6
    Conserved Domains (5) summary
    pfam05186
    Location:546 → 578
    Dpy-30; Dpy-30 motif
    pfam00621
    Location:624 → 829
    RhoGEF; RhoGEF domain
    pfam12937
    Location:121 → 164
    F-box-like; F-box-like
    pfam14252
    Location:331 → 468
    DUF4347; Domain of unknown function (DUF4347)
    cl17171
    Location:893 → 980
    PH-like; Pleckstrin homology-like domain

  2. XM_009293170.4 → XP_009291445.1  epithelial cell-transforming sequence 2 oncogene-like isoform X1

    See identical proteins and their annotated locations for XP_009291445.1

    UniProtKB/TrEMBL
    A0A8M3ARI6
    Conserved Domains (5) summary
    pfam05186
    Location:546 → 578
    Dpy-30; Dpy-30 motif
    pfam00621
    Location:624 → 829
    RhoGEF; RhoGEF domain
    pfam12937
    Location:121 → 164
    F-box-like; F-box-like
    pfam14252
    Location:331 → 468
    DUF4347; Domain of unknown function (DUF4347)
    cl17171
    Location:893 → 980
    PH-like; Pleckstrin homology-like domain

  3. XM_009293171.4 → XP_009291446.1  epithelial cell-transforming sequence 2 oncogene-like isoform X2

    UniProtKB/TrEMBL
    A0A8M3AJ54, F1QUJ5
    Related
    ENSDARP00000108367.2, ENSDART00000129416.3
    Conserved Domains (5) summary
    pfam05186
    Location:546 → 578
    Dpy-30; Dpy-30 motif
    pfam00621
    Location:624 → 804
    RhoGEF; RhoGEF domain
    pfam12937
    Location:121 → 164
    F-box-like; F-box-like
    pfam14252
    Location:331 → 468
    DUF4347; Domain of unknown function (DUF4347)
    cl17171
    Location:868 → 955
    PH-like; Pleckstrin homology-like domain

  4. XM_009293168.4 → XP_009291443.1  epithelial cell-transforming sequence 2 oncogene-like isoform X1

    See identical proteins and their annotated locations for XP_009291443.1

    UniProtKB/TrEMBL
    A0A8M3ARI6
    Conserved Domains (5) summary
    pfam05186
    Location:546 → 578
    Dpy-30; Dpy-30 motif
    pfam00621
    Location:624 → 829
    RhoGEF; RhoGEF domain
    pfam12937
    Location:121 → 164
    F-box-like; F-box-like
    pfam14252
    Location:331 → 468
    DUF4347; Domain of unknown function (DUF4347)
    cl17171
    Location:893 → 980
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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