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LOC100316900 LeTIR [ Solanum lycopersicum (tomato) ]

Gene ID: 100316900, updated on 3-Apr-2024

Summary

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Gene symbol
LOC100316900
Gene description
LeTIR
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC100316900 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 4 NC_015441.3 (60945678..60948788, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 4 NC_015441.2 (60859854..60862964, complement)

Chromosome 4 - NC_015441.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104647152 Neighboring gene uncharacterized LOC112941383 Neighboring gene zinc-finger homeodomain protein 2 Neighboring gene serine/threonine-protein kinase-like protein At3g51990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The auxin receptor homologue in Solanum lycopersicum stimulates tomato fruit set and leaf morphogenesis. Ren Z, et al. J Exp Bot, 2011 May. PMID 21266497
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LeTIR

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247793.2 → NP_001234722.2  LeTIR

    Status: VALIDATED

    Source sequence(s)
    AEKE03003140, AW648140, AW648673, AW737534, AW934519, BE354802, BE354806, BI924090, BI925159, DB699510
    UniProtKB/TrEMBL
    A0A3Q7G8T5

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015441.3 Reference SL3.0 Primary Assembly

    Range
    60945678..60948788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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