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HOTTIP HOXA distal transcript antisense RNA [ Homo sapiens (human) ]

Gene ID: 100316868, updated on 6-Apr-2021

Summary

Official Symbol
HOTTIPprovided by HGNC
Official Full Name
HOXA distal transcript antisense RNAprovided by HGNC
Primary source
HGNC:HGNC:37461
See related
MIM:614060
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HOXA-AS6; HOXA13-AS1; NCRNA00213
Summary
This gene produces a long RNA in antisense to the HOXA gene cluster. This transcript may regulate expression of HOXA genes in cis. This gene is upregulated in tumors and is implicated in the promotion of cell proliferation. [provided by RefSeq, Dec 2017]
Expression
Biased expression in colon (RPKM 4.0), prostate (RPKM 3.7) and 2 other tissues See more
Orthologs
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Genomic context

See HOTTIP in Genome Data Viewer
Location:
7p15.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (27200421..27207259)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (27240040..27246878)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene HOXA11 antisense RNA Neighboring gene NUP98-HOXA13 recombination region Neighboring gene homeobox A13 Neighboring gene EVX1 antisense RNA Neighboring gene VISTA enhancer hs629 Neighboring gene even-skipped homeobox 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • HOXA cluster antisense RNA 6 (non-protein coding)
  • HOXA distal transcript antisense RNA (non-protein coding)
  • HOXA13 antisense RNA 1 (non-protein coding)
  • HoxA transcript at the distal tip

Clone Names

  • FLJ36668

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037843.3 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC004080

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    27200421..27207259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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