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PITPNA-AS1 PITPNA antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100306951, updated on 10-Oct-2023

Summary

Official Symbol
PITPNA-AS1provided by HGNC
Official Full Name
PITPNA antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44116
See related
Ensembl:ENSG00000236618 AllianceGenome:HGNC:44116
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 12.4), testis (RPKM 11.1) and 25 other tissues See more
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Genomic context

See PITPNA-AS1 in Genome Data Viewer
Location:
17p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (1516919..1518096)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (1405675..1406850)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (1420213..1421390)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1371831-1372451 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11451 Neighboring gene myosin IC Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11452 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7955 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7956 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7957 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1394312-1395031 Neighboring gene uncharacterized LOC105371483 Neighboring gene inositol polyphosphate-5-phosphatase K Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7960 Neighboring gene phosphatidylinositol transfer protein alpha Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1437952-1438452 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:1445478-1446238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1453921-1454835 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11453 Neighboring gene MPRA-validated peak2674 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1463158-1464124 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11454 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7961 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:1465907-1466406 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7962 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1474719-1475554 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1478810-1479622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1479623-1480434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1480435-1481246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1481247-1482057 Neighboring gene solute carrier family 43 member 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1488375-1488922 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1488923-1489468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1489469-1490015 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1490016-1490561 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1490562-1491108 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1491109-1491655 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1493297-1493842 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:1493843-1494388 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:1495156-1495321 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1496929-1497430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1509837-1510602 Neighboring gene RNA, 7SL, cytoplasmic 105, pseudogene Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • PITPNA antisense RNA 1 (non-protein coding)

Clone Names

  • AC100748.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028514.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA341969, CA311656, DB053306
    Related
    ENST00000425081.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    1516919..1518096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    1405675..1406850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)