U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00882 long intergenic non-protein coding RNA 882 [ Homo sapiens (human) ]

Gene ID: 100302640, updated on 10-Oct-2023

Summary

Official Symbol
LINC00882provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 882provided by HGNC
Primary source
HGNC:HGNC:48568
See related
AllianceGenome:HGNC:48568
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 9.4), heart (RPKM 2.8) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00882 in Genome Data Viewer
Location:
3q13.12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107109790..107240638, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (109829478..109960322, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (106828637..106959485, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1308, pseudogene Neighboring gene PTPN11 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr3:106861597-106862136 Neighboring gene uncharacterized LOC124909404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14585 Neighboring gene DPPA2 upstream binding RNA Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107003277-107004086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107004087-107004896 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:107027390-107028318 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107034942-107035442 Neighboring gene CS pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BG196202, BX117271, DB443285

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    107109790..107240638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    109829478..109960322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)