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LINC00173 long intergenic non-protein coding RNA 173 [ Homo sapiens (human) ]

Gene ID: 100287569, updated on 12-Jun-2022

Summary

Official Symbol
LINC00173provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 173provided by HGNC
Primary source
HGNC:HGNC:33791
See related
Ensembl:ENSG00000196668 AllianceGenome:HGNC:33791
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00173
Expression
Broad expression in skin (RPKM 2.0), endometrium (RPKM 1.6) and 22 other tissues See more
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Genomic context

See LINC00173 in Genome Data Viewer
Location:
12q24.22
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (116533422..116536513)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (116514655..116517747)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (116971227..116974318)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370008 Neighboring gene long intergenic non-protein coding RNA 2457 Neighboring gene Sharpr-MPRA regulatory region 12411 Neighboring gene microtubule associated protein 1 light chain 3 beta 2 Neighboring gene uncharacterized LOC124903028 Neighboring gene uncharacterized LOC124903027

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027345.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK124947, BC122872
    Related
    ENST00000480237.1
  2. NR_027346.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes alternate exon structure at both its 5' and 3' ends, compared to variant 1.
    Source sequence(s)
    BC038547
    Related
    ENST00000470091.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    116533422..116536513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    116514655..116517747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207436.1: Suppressed sequence

    Description
    NM_207436.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.