LOC100208137 DNA repair endonuclease XPF-like [Hydra vulgaris (swiftwater hydra)] - Gene

Summary

Gene symbol: LOC100208137
Gene description: DNA repair endonuclease XPF-like
See related: EnsemblRapid:LOC100208137
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Hydra vulgaris
Lineage: Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
Also known as: XPF; ERCC4
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Genomic context

Location:: chromosome: 12

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	HydraT2T_105 (GCF_037890685.1)	12	NC_088975.1 (5339420..5342982, complement)
RS_2024_06	current	HydraT2T_AEP (GCF_038396675.1)	12	NC_088931.1 (6805649..6808164, complement)
103	previous assembly	Hydra_105_v3 (GCF_022113875.1)	2	NC_061157.1 (72653864..72657407)

Chromosome 12 - NC_088975.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables damaged DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables single-stranded DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables single-stranded DNA endodeoxyribonuclease activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in double-strand break repair via homologous recombination	IEA Inferred from Electronic Annotation more info	PubMed
involved_in nucleotide-excision repair involved in interstrand cross-link repair	IEA Inferred from Electronic Annotation more info	PubMed
involved_in resolution of meiotic recombination intermediates	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of nucleotide-excision repair factor 1 complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: DNA repair endonuclease XPF-like

Names: Hydra vulgaris DNA repair endonuclease XPF; xeroderma pigmentosum F DNA repair endonuclease

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001309657.1 → NP_001296586.1 DNA repair endonuclease XPF-like

See identical proteins and their annotated locations for NP_001296586.1

Status: PROVISIONAL

Source sequence(s)

HQ380893

UniProtKB/TrEMBL

A0A8B7D7I7, E5L9E3

Related

NP_001296586.1, NM_001309657.1

Conserved Domains (2) summary

TIGR00596
Location:71 → 797

rad1; DNA repair protein (rad1)

pfam02732
Location:579 → 709

ERCC4; ERCC4 domain

RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

NC_088975.1 Reference HydraT2T_105 Primary Assembly

Range

5339420..5342982 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012698645.3 → XP_012554099.2 DNA repair endonuclease XPF-like isoform X1

UniProtKB/TrEMBL

A0A8B7D7I7

Related

XP_012554099.2
XM_065828126.1 → XP_065684198.1 DNA repair endonuclease XPF-like isoform X1

UniProtKB/TrEMBL

A0A8B7D7I7