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LOC100200194 minicollagen 8 [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100200194, updated on 27-Jun-2024

Summary

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Gene symbol
LOC100200194
Gene description
minicollagen 8
See related
EnsemblRapid:LOC100200194
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC100200194 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 11 NC_088974.1 (6437440..6439949)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 11 NC_088930.1 (5966847..5969312)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 7 NC_061162.1 (6181453..6183962)

Chromosome 11 - NC_088974.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100212471 Neighboring gene uncharacterized LOC124813237 Neighboring gene uncharacterized LOC101235129 Neighboring gene piggyBac transposable element-derived protein 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of complex structures: minicollagens shape the cnidarian nematocyst. David CN, et al. Trends Genet, 2008 Sep. PMID 18676050
  2. Mini-collagens in hydra nematocytes. Kurz EM, et al. J Cell Biol, 1991 Nov. PMID 1955459, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
minicollagen 8
Names
minicollagen 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280806.1 → NP_001267735.1  minicollagen 8 precursor

    See identical proteins and their annotated locations for NP_001267735.1

    Status: PROVISIONAL

    Source sequence(s)
    BK008442
    UniProtKB/TrEMBL
    G7H7W1
    Related
    NP_001267735.1, NM_001280806.1

RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088974.1 Reference HydraT2T_105 Primary Assembly

    Range
    6437440..6439949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HydraT2T_AEP

Genomic

  1. NC_088930.1 Alternate HydraT2T_AEP

    Range
    5966847..5969312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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