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LOC100198519 apoptotic chromatin condensation inducer in the nucleus [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100198519, updated on 27-Jun-2024

Summary

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Gene symbol
LOC100198519
Gene description
apoptotic chromatin condensation inducer in the nucleus
See related
EnsemblRapid:LOC100198519
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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Location:
chromosome: 15
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 15 NC_088978.1 (36162345..36191781)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 15 NC_088934.1 (32866103..32899855)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 1 NC_061156.1 (30383129..30412544)

Chromosome 15 - NC_088978.1Genomic Context describing neighboring genes Neighboring gene deaminated glutathione amidase Neighboring gene mitochondrial inner membrane m-AAA protease component AFG3L2 Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene transfer RNA leucine (anticodon UAA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome. Wenger Y, et al. BMC Genomics, 2013 Mar 25. PMID 23530871, Free PMC Article
  2. Punctuated emergences of genetic and phenotypic innovations in eumetazoan, bilaterian, euteleostome, and hominidae ancestors. Wenger Y, et al. Genome Biol Evol, 2013. PMID 24065732, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apoptotic chromatin condensation inducer in the nucleus

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088978.1 Reference HydraT2T_105 Primary Assembly

    Range
    36162345..36191781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002160583.5 → XP_002160619.3  apoptotic chromatin condensation inducer in the nucleus isoform X1

    UniProtKB/TrEMBL
    A0A8B6XMR3
    Related
    XP_002160619.3

Alternate HydraT2T_AEP

Genomic

  1. NC_088934.1 Alternate HydraT2T_AEP

    Range
    32866103..32899855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065820126.1 → XP_065676198.1  apoptotic chromatin condensation inducer in the nucleus isoform X2

Nucleotide Protein
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Research Materials