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LOC100198380 phosphatidylinositol transfer protein [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100198380, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100198380
Gene description
phosphatidylinositol transfer protein
See related
EnsemblRapid:LOC100198380
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC100198380 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Hydra_105_v3 (GCF_022113875.1) 6 NC_061161.1 (18592570..18593642)
102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004169399.1 (49313..50576)

Chromosome 6 - NC_061161.1Genomic Context describing neighboring genes Neighboring gene early endosome antigen 1 Neighboring gene uncharacterized LOC124812197 Neighboring gene F-box only protein 47-like Neighboring gene AP-2 complex subunit alpha-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics. Rodrigues M, et al. Biofouling, 2016 Oct. PMID 27661452, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylcholine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylcholine transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol transfer protein alpha isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hydra_105_v3 Primary Assembly

Genomic

  1. NC_061161.1 Reference Hydra_105_v3 Primary Assembly

    Range
    18592570..18593642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002162259.4 → XP_002162295.1  phosphatidylinositol transfer protein alpha isoform

    UniProtKB/TrEMBL
    T2MEA9
    Related
    XP_002162295.1, XM_002162259.4
    Conserved Domains (1) summary
    cl14643
    Location:10 → 269
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
Nucleotide Protein
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