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LOC100193087 uncharacterized LOC100193087 [ Zea mays ]

Gene ID: 100193087, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100193087
Gene description
uncharacterized LOC100193087
Locus tag
ZEAMMB73_Zm00001d032280
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
pco129304b; GRMZM2G015642
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Genomic context

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See LOC100193087 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (221825555..221829804, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (220120857..220124986, complement)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103643313 Neighboring gene ABC transporter A family member 2 Neighboring gene uncharacterized LOC118476123 Neighboring gene aminopeptidase M1-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein targeting to ER IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of signal recognition particle receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100193087
Names
pco129304(71)
signal recognition particle binding

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001138250.1 → NP_001131722.1  uncharacterized protein LOC100193087

    See identical proteins and their annotated locations for NP_001131722.1

    Status: PREDICTED

    Source sequence(s)
    BT035249
    UniProtKB/TrEMBL
    A0A317YHW8, B4FDR1
    Conserved Domains (1) summary
    cd04105
    Location:53 → 252
    SR_beta; Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    221825555..221829804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020540185.3 → XP_020395774.1  uncharacterized protein LOC100193087 isoform X1

    UniProtKB/TrEMBL
    A0A317YHW8
    Conserved Domains (1) summary
    cd04105
    Location:53 → 258
    SR_beta; Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)
Nucleotide Protein
Heading Accession and Version

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