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TPM2 tropomyosin 2 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100192321, updated on 8-Mar-2024

Summary

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Gene symbol
TPM2
Gene description
tropomyosin 2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See TPM2 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) Z NC_044241.2 (42520710..42534240)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) Z NC_045027.1 (44956816..44970357)

Chromosome Z - NC_044241.2Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3 Neighboring gene talin 1 Neighboring gene uncharacterized LOC115491037 Neighboring gene uncharacterized LOC115491018 Neighboring gene gamma-secretase subunit Aph-1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Wada K, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17018643, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomyosin beta chain
Names
tropomyosin 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136480.1 → NP_001129952.1  tropomyosin beta chain

    See identical proteins and their annotated locations for NP_001129952.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ214393
    UniProtKB/TrEMBL
    B5FZA2, B5FZA3
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044241.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    42520710..42534240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030257220.2 → XP_030113080.1  tropomyosin beta chain isoform X4

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  2. XM_030257218.3 → XP_030113078.1  tropomyosin beta chain isoform X2

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  3. XM_030257222.3 → XP_030113082.1  tropomyosin beta chain isoform X5

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  4. XM_030257219.3 → XP_030113079.1  tropomyosin beta chain isoform X3

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  5. XM_030257217.2 → XP_030113077.1  tropomyosin beta chain isoform X1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  6. XM_012577539.4 → XP_012432993.1  tropomyosin beta chain isoform X9

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  7. XM_012577538.3 → XP_012432992.1  tropomyosin beta chain isoform X8

    See identical proteins and their annotated locations for XP_012432992.1

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  8. XM_012577537.3 → XP_012432991.1  tropomyosin beta chain isoform X6

    See identical proteins and their annotated locations for XP_012432991.1

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  9. XM_012577540.4 → XP_012432994.1  tropomyosin beta chain isoform X10

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  10. XM_012577536.4 → XP_012432990.1  tropomyosin beta chain isoform X7

    See identical proteins and their annotated locations for XP_012432990.1

    UniProtKB/TrEMBL
    B5FZA3
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin
Nucleotide Protein
Heading Accession and Version

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