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LINC00092 long intergenic non-protein coding RNA 92 [ Homo sapiens (human) ]

Gene ID: 100188953, updated on 10-Oct-2023

Summary

Official Symbol
LINC00092provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 92provided by HGNC
Primary source
HGNC:HGNC:31408
See related
Ensembl:ENSG00000225194 AllianceGenome:HGNC:31408
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00092
Expression
Broad expression in thyroid (RPKM 1.9), ovary (RPKM 1.2) and 19 other tissues See more
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Genomic context

See LINC00092 in Genome Data Viewer
Location:
9q22.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (96019732..96021811, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (108191105..108193184, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98782014..98784093, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 6 like 2 Neighboring gene RNA, 5S ribosomal pseudogene 289 Neighboring gene PARK7 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98785015-98785515 Neighboring gene uncharacterized LOC105376159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28649 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98788545-98789068 Neighboring gene uncharacterized LOC158435 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:98850190-98851389

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024129.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL159167, BC043559, DA279933
    Related
    ENST00000412122.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    96019732..96021811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    108191105..108193184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)