U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100186785 choline/ethanolamine kinase [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100186785, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100186785
Gene description
choline/ethanolamine kinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
si:ch211-218c17.2-like
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 1 NC_020166.2 (7853455..7861304)

Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113474587 Neighboring gene uncharacterized LOC104266873 Neighboring gene microRNA mir-4162 Neighboring gene Rif protein Neighboring gene membrane progestin receptor gamma-A-like Neighboring gene uncharacterized LOC104266874

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_020166.2 Chromosome 1 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
choline/ethanolamine kinase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020166.2 Reference KH Primary Assembly

    Range
    7853455..7861304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009864167.3 → XP_009862469.1  choline/ethanolamine kinase isoform X1

    UniProtKB/TrEMBL
    F7BD35
    Conserved Domains (1) summary
    cl21453
    Location:59 → 381
    PKc_like; Protein Kinases, catalytic domain

  2. XM_009864168.3 → XP_009862470.1  choline/ethanolamine kinase isoform X2

    See identical proteins and their annotated locations for XP_009862470.1

    UniProtKB/TrEMBL
    F7BD35
    Conserved Domains (1) summary
    cd05156
    Location:51 → 373
    ChoK_euk; Euykaryotic Choline Kinase

  3. XM_026836300.1 → XP_026692101.1  choline/ethanolamine kinase isoform X2

    UniProtKB/TrEMBL
    F7BD35
    Conserved Domains (1) summary
    cd05156
    Location:51 → 373
    ChoK_euk; Euykaryotic Choline Kinase

RNA

  1. XR_717766.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials