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LOC100185360 exosome complex component CSL4-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100185360, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100185360
Gene description
exosome complex component CSL4-like
See related
Ensembl:ENSCING00000022734
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 2 NC_020167.2 (423834..424890)

Chromosome 2 - NC_020167.2Genomic Context describing neighboring genes Neighboring gene synaptotagmin-like protein 1 Neighboring gene protein lin-9 homolog Neighboring gene dihydropyrimidinase Neighboring gene zinc finger (CCHC)-24 Neighboring gene transmembrane and TPR repeat-containing protein 1-like Neighboring gene transmembrane and TPR repeat-containing protein 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020167.2 Chromosome 2 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component CSL4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020167.2 Reference KH Primary Assembly

    Range
    423834..424890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002122006.5 → XP_002122042.1  exosome complex component CSL4-like

    UniProtKB/TrEMBL
    H2XUI3
    Related
    ENSCINP00000033317
    Conserved Domains (3) summary
    COG1096
    Location:9 → 187
    Csl4; Exosome complex RNA-binding protein Csl4, contains S1 and Zn-ribbon domains [Translation, ribosomal structure and biogenesis]
    cd05791
    Location:64 → 153
    S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
    pfam14382
    Location:6 → 41
    ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
Nucleotide Protein
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