U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100183071 histone acetyltransferase KAT2A [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100183071, updated on 25-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100183071
Gene description
histone acetyltransferase KAT2A
See related
Ensembl:ENSCING00000018013
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
kat2b
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 7 NC_020172.2 (4069100..4076141, complement)

Chromosome 7 - NC_020172.2Genomic Context describing neighboring genes Neighboring gene cyclic AMP receptor 3-like Neighboring gene organic solute transporter subunit alpha-like Neighboring gene organic solute transporter subunit alpha-like Neighboring gene DNA-directed RNA polymerase I subunit RPA1-like Neighboring gene histone acetyltransferase KAT2A

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_020172.2 Chromosome 7 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3 acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
histone acetyltransferase KAT2A
Names
K(lysine) acetyltransferase 2B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020172.2 Reference KH Primary Assembly

    Range
    4069100..4076141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002123160.3 → XP_002123196.3  histone acetyltransferase KAT2A

    UniProtKB/TrEMBL
    F6VCN7
    Conserved Domains (4) summary
    cd05509
    Location:564 → 664
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5076
    Location:325 → 662
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00583
    Location:386 → 458
    Acetyltransf_1; Acetyltransferase (GNAT) family
    pfam06466
    Location:1 → 221
    PCAF_N; PCAF (P300/CBP-associated factor) N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.