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LOC100181026 endonuclease V [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100181026, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100181026
Gene description
endonuclease V
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 10 NC_020175.2 (4516729..4521542)

Chromosome 10 - NC_020175.2Genomic Context describing neighboring genes Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 Neighboring gene neurotrimin-like Neighboring gene large neutral amino acids transporter small subunit 4-like Neighboring gene calcium-activated potassium channel subunit beta-4-like Neighboring gene uncharacterized LOC100185743

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020175.2 Chromosome 10 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity, producing 5'-phosphomonoesters IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endonuclease V

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020175.2 Reference KH Primary Assembly

    Range
    4516729..4521542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026836370.1 → XP_026692171.1  endonuclease V isoform X2

    Conserved Domains (1) summary
    cd06559
    Location:10 → 239
    Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

  2. XM_026836369.1 → XP_026692170.1  endonuclease V isoform X1

    Conserved Domains (1) summary
    cd06559
    Location:10 → 259
    Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
Nucleotide Protein
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