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VPS13C vacuolar protein sorting 13 homolog C [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171773, updated on 26-Mar-2024

Summary

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Gene symbol
VPS13C
Gene description
vacuolar protein sorting 13 homolog C
Locus tag
CR201_G0037145
See related
Ensembl:ENSPPYG00000006529
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
88
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 16 NC_072001.2 (64914310..65114121, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 15 NC_072000.1 (62193974..62393758, complement)

Chromosome 16 - NC_072001.2Genomic Context describing neighboring genes Neighboring gene RAR related orphan receptor A Neighboring gene uncharacterized LOC134760268 Neighboring gene uncharacterized LOC100939131 Neighboring gene uncharacterized LOC129050131 Neighboring gene U2 spliceosomal RNA Neighboring gene C2 calcium dependent domain containing 4A Neighboring gene C2 calcium dependent domain containing 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469N075

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intermembrane lipid transfer protein VPS13C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072001.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    64914310..65114121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002825516.4 → XP_002825562.2  intermembrane lipid transfer protein VPS13C isoform X2

  2. XM_054531580.2 → XP_054387555.1  intermembrane lipid transfer protein VPS13C isoform X1

  3. XM_054531581.2 → XP_054387556.1  intermembrane lipid transfer protein VPS13C isoform X4

  4. XM_054531582.2 → XP_054387557.1  intermembrane lipid transfer protein VPS13C isoform X6

  5. XM_063716171.1 → XP_063572241.1  intermembrane lipid transfer protein VPS13C isoform X5

  6. XM_063716170.1 → XP_063572240.1  intermembrane lipid transfer protein VPS13C isoform X3

Nucleotide Protein
Heading Accession and Version

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