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ctc1 CTS telomere maintenance complex component 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100158579, updated on 17-Aug-2024

Summary

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Official Symbol
ctc1provided by Xenbase
Official Full Name
CTS telomere maintenance complex component 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6456431
See related
Ensembl:ENSXETG00000031858
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
aaf132; aaf-132; c17orf68
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
24
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (144463993..144483115, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (131669489..131680413)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene vesicle associated membrane protein 2 Neighboring gene period circadian regulator 1 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA proline (anticodon UGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CST complex subunit CTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128009.1 → NP_001121481.1  CST complex subunit CTC1

    See identical proteins and their annotated locations for NP_001121481.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166255
    UniProtKB/TrEMBL
    A0A803JV23, B2GUF5
    Conserved Domains (1) summary
    cl24054
    Location:6 → 805
    CTC1; CST, telomere maintenance, complex subunit CTC1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    144463993..144483115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897664.1 → XP_031753524.1  CST complex subunit CTC1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q005, A0A803JBX8, A0A8J1J6N4
    Related
    ENSXETP00000063502.3, ENSXETT00000064338.3
    Conserved Domains (1) summary
    cl24054
    Location:52 → 1146
    CTC1; CST, telomere maintenance, complex subunit CTC1

  2. XM_031897665.1 → XP_031753525.1  CST complex subunit CTC1 isoform X2

    UniProtKB/TrEMBL
    A0A803JV23, A0A8J1J933
    Related
    ENSXETP00000111874.1, ENSXETT00000120420.1
    Conserved Domains (1) summary
    cl24054
    Location:6 → 805
    CTC1; CST, telomere maintenance, complex subunit CTC1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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