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LOC100135935 hepcidin-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135935, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100135935
Gene description
hepcidin-like
See related
Ensembl:ENSOMYG00000005355
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
hamp; Hepcidin
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (27276905..27278371)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (30662798..30663983)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118944508 Neighboring gene upstream stimulatory factor 2 Neighboring gene hepcidin-like Neighboring gene IgLON family member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection of the hepcidin prepropeptide and mature peptide in liver of rainbow trout. Álvarez CA, et al. Dev Comp Immunol, 2013 Sep. PMID 23603124
  2. Immune-relevant (including acute phase) genes identified in the livers of rainbow trout, Oncorhynchus mykiss, by means of suppression subtractive hybridization. Bayne CJ, et al. Dev Comp Immunol, 2001 Apr. PMID 11164886

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Hepcidin peptide is up-regulated by iron and bacterial components in the trout liver.
    Title: Detection of the hepcidin prepropeptide and mature peptide in liver of rainbow trout.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepcidin
Names
hepcidin antimicrobial peptide
putative hepcidin antibacterial peptide

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    27276905..27278371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021595153.2 → XP_021450828.1  hepcidin

    UniProtKB/TrEMBL
    A0A060W0G8, A0A060W6A2, E7EJB5
    Related
    ENSOMYP00000110131.1, ENSOMYT00000132466.1
    Conserved Domains (1) summary
    pfam06446
    Location:36 → 88
    Hepcidin; Hepcidin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DFD6.1 GenPept UniProtKB/Swiss-Prot:Q9DFD6

Gene LinkOut

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