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rtst6galnac GalNAc alpha 2,6-sialyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135821, updated on 14-Dec-2023

Summary

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Gene symbol
rtst6galnac
Gene description
GalNAc alpha 2,6-sialyltransferase
See related
Ensembl:ENSOMYG00000044620
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See rtst6galnac in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 20 NC_048584.1 (38342990..38358741, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 20 NC_035096.1 (35002700..35017390, complement)

Chromosome 20 - NC_048584.1Genomic Context describing neighboring genes Neighboring gene brain-specific angiogenesis inhibitor 1-associated protein 2-like Neighboring gene serine/threonine-protein kinase LMTK1 Neighboring gene tryptase Neighboring gene nuclear protein localization protein 4 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GalNAc alpha 2,6-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124217.1 → NP_001117689.1  GalNAc alpha 2,6-sialyltransferase

    See identical proteins and their annotated locations for NP_001117689.1

    Status: PROVISIONAL

    Source sequence(s)
    AB097943
    UniProtKB/TrEMBL
    A0A060YF96, Q7T2X4
    Related
    ENSOMYP00000098232.2, ENSOMYT00000106669.2
    Conserved Domains (1) summary
    pfam00777
    Location:158 → 444
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048584.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    38342990..38358741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials