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LOC100135808 gonadotropin alpha subunit [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135808, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100135808
Gene description
gonadotropin alpha subunit
See related
Ensembl:ENSOMYG00000003650
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (54716329..54717659, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (50239521..50240855, complement)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110534935 Neighboring gene SPARC-like 1 Neighboring gene U7 small nuclear RNA Neighboring gene secretory calcium-binding phosphoprotein 1 Neighboring gene TNFAIP3-interacting protein 2 Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Berthelot C, et al. Nat Commun, 2014 Apr 22. PMID 24755649, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables follicle-stimulating hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of steroid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in thyroid hormone generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of follicle-stimulating hormone complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gonadotropin alpha subunit
Names
GTH alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124204.1 → NP_001117676.1  gonadotropin alpha subunit precursor

    See identical proteins and their annotated locations for NP_001117676.1

    Status: PROVISIONAL

    Source sequence(s)
    AB050834
    UniProtKB/TrEMBL
    A0A060X3M6, A0A8C7V334, Q9DG94
    Related
    ENSOMYP00000007120.2, ENSOMYT00000007931.2
    Conserved Domains (1) summary
    smart00067
    Location:32 → 114
    GHA; Glycoprotein hormone alpha chain homologues

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    54716329..54717659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021617171.2 → XP_021472846.1  gonadotropin alpha subunit isoform X1

    Conserved Domains (1) summary
    smart00067
    Location:70 → 152
    GHA; Glycoprotein hormone alpha chain homologues
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials