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LOC100131635 hCG1645011-like [ Homo sapiens (human) ]

Gene ID: 100131635, updated on 10-Oct-2023

Summary

Gene symbol
LOC100131635
Gene description
hCG1645011-like
See related
Ensembl:ENSG00000228804
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC100131635 in Genome Data Viewer
Location:
3q27.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (187702366..187732415)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (190519821..190549925)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (187420154..187450203)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374262 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:187285231-187286214 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:187286215-187287197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187352529-187353028 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:187416261-187416442 Neighboring gene somatostatin Neighboring gene receptor transporter protein 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:187455905-187456884 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:187457386-187457561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187458977-187459478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187459479-187459978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:187462369-187462894 Neighboring gene BCL6 transcription repressor Neighboring gene BCL6 antisense RNA 1 Neighboring gene uncharacterized LOC105374263

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034062.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW235368
    Related
    ENST00000437407.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    187702366..187732415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    190519821..190549925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)