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VHRT ventricular heart development associated lncRNA [ Homo sapiens (human) ]

Gene ID: 100131138, updated on 7-Jan-2025

Summary

Official Symbol
VHRTprovided by HGNC
Official Full Name
ventricular heart development associated lncRNAprovided by HGNC
Primary source
HGNC:HGNC:50688
See related
Ensembl:ENSG00000185847 AllianceGenome:HGNC:50688
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MASCC1; LINC01405
Expression
Biased expression in prostate (RPKM 4.3), heart (RPKM 2.3) and 1 other tissue See more
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Genomic context

See VHRT in Genome Data Viewer
Location:
12q24.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (110936602..110937448)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (110915785..110916631)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (111374406..111375252)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:111290753-111291952 Neighboring gene coiled-coil domain containing 63 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:111298099-111298599 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:111355215-111355716 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:111355717-111356216 Neighboring gene VISTA enhancer hs2149 Neighboring gene VISTA enhancer hs2493 Neighboring gene myosin light chain 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:111373669-111374362 Neighboring gene Sharpr-MPRA regulatory region 3484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:111375751-111376443 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:111394805-111396004 Neighboring gene long intergenic non-protein coding RNA 1404 Neighboring gene uncharacterized LOC105369981

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

General gene information

Markers

Other Names

  • Metastasis-Associated Squamous Cell Carcinoma 1
  • VENTHEART
  • long intergenic non-protein coding RNA 1405

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036513.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ276555, AW015651
    Related
    ENST00000331096.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    110936602..110937448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    110915785..110916631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)