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LOC100130357 uncharacterized LOC100130357 [ Homo sapiens (human) ]

Gene ID: 100130357, updated on 13-May-2022

Summary

Gene symbol
LOC100130357
Gene description
uncharacterized LOC100130357
See related
Ensembl:ENSG00000215022
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in bone marrow (RPKM 1.1), brain (RPKM 0.5) and 24 other tissues See more
Orthologs
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Genomic context

See LOC100130357 in Genome Data Viewer
Location:
6p24.1
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (13273094..13295586, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (13146356..13168826, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (13273326..13295818, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 1 Neighboring gene TBC1D7-LOC100130357 readthrough Neighboring gene uncharacterized LOC105374933 Neighboring gene Sharpr-MPRA regulatory region 805 Neighboring gene uncharacterized LOC124901261 Neighboring gene TBC1 domain family member 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Readthrough TBC1D7-LOC100130357

Readthrough gene: TBC1D7-LOC100130357, Included gene: TBC1D7

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134859.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' and 3' exon structure. This variant is represented as non-coding because it lacks an ORF that meets RefSeq criteria.
    Source sequence(s)
    AL008729, BX089972
  2. NR_160971.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL008729
    Related
    ENST00000606150.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    13273094..13295586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    13146356..13168826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001242698.1: Suppressed sequence

    Description
    NM_001242698.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.