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SUPT20HL1 SUPT20H like 1 [ Homo sapiens (human) ]

Gene ID: 100130302, updated on 26-Oct-2022

Summary

Official Symbol
SUPT20HL1provided by HGNC
Official Full Name
SUPT20H like 1provided by HGNC
Primary source
HGNC:HGNC:30773
See related
Ensembl:ENSG00000223731 AllianceGenome:HGNC:30773
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPT20L; FAM48B1
Summary
Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See SUPT20HL1 in Genome Data Viewer
Location:
Xp22.11
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (24360639..24367839)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (23944797..23952006)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (24378756..24385956)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chrX.477 Neighboring gene SUPT20H like 2 Neighboring gene ribosomal protein S26 pseudogene 58 Neighboring gene pyruvate dehydrogenase kinase 3 Neighboring gene SNRPE pseudogene 9

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of SAGA complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transcription factor SPT20 homolog-like 1
Names
SPT20 homolog, SAGA complex component like 1
family with sequence similarity 48, member B1
suppressor of Ty 20 homolog-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136234.3NP_001129706.3  transcription factor SPT20 homolog-like 1

    Status: VALIDATED

    Source sequence(s)
    AC004552
    Consensus CDS
    CCDS94581.1
    UniProtKB/TrEMBL
    A0A7I2YQ69
    Related
    ENSP00000509731.1, ENST00000686983.1
    Conserved Domains (2) summary
    PHA03247
    Location:381764
    PHA03247; large tegument protein UL36; Provisional
    pfam12090
    Location:64217
    Spt20; Spt20 family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    24360639..24367839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    23944797..23952006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)