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CERNA1 competing endogenous lncRNA 1 for miR-4707-5p and miR-4767 [ Homo sapiens (human) ]

Gene ID: 100129973, updated on 10-Oct-2023

Summary

Official Symbol
CERNA1provided by HGNC
Official Full Name
competing endogenous lncRNA 1 for miR-4707-5p and miR-4767provided by HGNC
Primary source
HGNC:HGNC:52664
See related
AllianceGenome:HGNC:52664
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 3.8), lung (RPKM 2.9) and 25 other tissues See more
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Genomic context

See CERNA1 in Genome Data Viewer
Location:
15q21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (52180026..52205879)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (49988681..50014493)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (52472223..52498076)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268150 Neighboring gene Sharpr-MPRA regulatory region 14256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9419 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9422 Neighboring gene ribosomal protein S13 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6444 Neighboring gene BCL2 like 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9423 Neighboring gene G protein subunit beta 5 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39709 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6445 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:52472339-52472840 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:52483687-52484186 Neighboring gene myosin VC Neighboring gene uncharacterized LOC105370820 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:52521219-52521393 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:52549514-52550090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:52552397-52552972 Neighboring gene microRNA 1266

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102751.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010674, AF007131, CD105583

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    52180026..52205879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    49988681..50014493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)