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LOC100129175 uncharacterized LOC100129175 [ Homo sapiens (human) ]

Gene ID: 100129175, updated on 17-Sep-2024

Summary

Gene symbol
LOC100129175
Gene description
uncharacterized LOC100129175
See related
Ensembl:ENSG00000224090
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC100129175 in Genome Data Viewer
Location:
2q35
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (219002215..219015722)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (219490590..219504097)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (219866937..219880444)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene crystallin beta A2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:219864283-219865266 Neighboring gene Sharpr-MPRA regulatory region 4963 Neighboring gene microRNA 375 Neighboring gene cilia and flagella associated protein 65 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:219889982-219890482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17138 Neighboring gene uncharacterized LOC107985987 Neighboring gene Indian hedgehog signaling molecule Neighboring gene microRNA 3131

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046086.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097468, AK092605, BF110506
    Related
    ENST00000441450.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    219002215..219015722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    219490590..219504097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)