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TRAPPC3L trafficking protein particle complex subunit 3L [ Homo sapiens (human) ]

Gene ID: 100128327, updated on 5-Aug-2022

Summary

Official Symbol
TRAPPC3Lprovided by HGNC
Official Full Name
trafficking protein particle complex subunit 3Lprovided by HGNC
Primary source
HGNC:HGNC:21090
See related
Ensembl:ENSG00000173626 MIM:614137; AllianceGenome:HGNC:21090
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BET3L; bA259P20.2
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Part of TRAPP complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in spleen (RPKM 1.6), placenta (RPKM 1.5) and 5 other tissues See more
Orthologs
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Genomic context

See TRAPPC3L in Genome Data Viewer
Location:
6q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (116494989..116545684, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (117678730..117729406, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (116816152..116866847, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene CALHM6 antisense RNA 1 Neighboring gene keratin 18 pseudogene 22 Neighboring gene calcium homeostasis modulator family member 6 Neighboring gene calcium homeostasis modulator family member 5 Neighboring gene calcium homeostasis modulator family member 4 Neighboring gene RWD domain containing 1 Neighboring gene uncharacterized LOC124901386 Neighboring gene radial spoke head component 4A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ11180

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of TRAPP complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cis-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
trafficking protein particle complex subunit 3-like protein
Names
BET3-like protein
TRAPPC3-like protein
trafficking protein particle complex 3 like
trafficking protein particle complex subunit 3 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139444.3NP_001132916.1  trafficking protein particle complex subunit 3-like protein

    See identical proteins and their annotated locations for NP_001132916.1

    Status: VALIDATED

    Source sequence(s)
    AI090359, AI745276, AL121953, AL445224, BE501784, BX280366, DY655209
    Consensus CDS
    CCDS47468.1
    UniProtKB/Swiss-Prot
    Q5T214, Q5T215
    Related
    ENSP00000357591.3, ENST00000368602.4
    Conserved Domains (1) summary
    cd14942
    Location:15170
    TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    116494989..116545684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    117678730..117729406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)