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Traj1 T cell receptor alpha joining 1 [ Mus musculus (house mouse) ]

Gene ID: 100124400, updated on 17-Aug-2024

Summary

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Official Symbol
Traj1provided by MGI
Official Full Name
T cell receptor alpha joining 1provided by MGI
Primary source
MGI:MGI:4439841
See related
Ensembl:ENSMUSG00000076927 IMGT/GENE-DB:TRAJ1; AllianceGenome:MGI:4439841
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16917
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Genomic context

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See Traj1 in Genome Data Viewer
Location:
14 C2; 14 27.7 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (54456271..54456299)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (54218814..54218842)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene T cell receptor alpha chain Neighboring gene STARR-positive B cell enhancer ABC_E7311 Neighboring gene CapStarr-seq enhancers MGSCv37_chr14:54846812-54847013 and MGSCv37_chr14:54847102-54847395 Neighboring gene STARR-positive B cell enhancer ABC_E5435 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:54852981-54853251 Neighboring gene STARR-positive B cell enhancer ABC_E1168 Neighboring gene T cell receptor alpha joining 3 Neighboring gene T cell receptor alpha joining 2 Neighboring gene T cell receptor alpha constant Neighboring gene defender against cell death 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence analysis of 95 kb near the 3' end of the murine T-cell receptor alpha/delta chain locus: strategy and methodology. Wilson RK, et al. Genomics, 1992 Aug. PMID 1505953
  2. A novel, inducible and T cell-specific enhancer located at the 3' end of the T cell receptor alpha locus. Winoto A, et al. EMBO J, 1989 Mar. PMID 2524381, Free PMC Article
  3. Alpha beta lineage-specific expression of the alpha T cell receptor gene by nearby silencers. Winoto A, et al. Cell, 1989 Nov 17. PMID 2582491
  4. Organization of the T-cell receptor alpha-chain gene and rearrangement in human T-cell leukaemias. Baer R, et al. Mol Biol Med, 1986 Jun. PMID 3016457
  5. Transfer of specificity by murine alpha and beta T-cell receptor genes. Dembić Z, et al. Nature, 1986 Mar 20-26. PMID 2421164

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007044.1 

    Range
    1791348..1791376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    54456271..54456299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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