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LIN28B-AS1 LIN28B antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100113403, updated on 10-Oct-2023

Summary

Official Symbol
LIN28B-AS1provided by HGNC
Official Full Name
LIN28B antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:21553
See related
Ensembl:ENSG00000203809 AllianceGenome:HGNC:21553
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf220; LINC00577; dJ439I14.1
Expression
Low expression observed in reference dataset See more
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Genomic context

See LIN28B-AS1 in Genome Data Viewer
Location:
6q16.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (104936294..104940527, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (106112313..106116542, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (105384169..105388402, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 Neighboring gene RNA, U6 small nuclear 897, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:105307475-105307974 Neighboring gene poly(A) binding protein cytoplasmic 4 pseudogene Neighboring gene MPRA-validated peak5989 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:105384704-105385204 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:105385205-105385705 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:105388624-105389458 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:105403995-105404932 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:105404933-105405870 Neighboring gene lin-28 homolog B Neighboring gene RNA, U6 small nuclear 1106, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17426 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17427 Neighboring gene blood vessel epicardial substance

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL135911, AL357315
    Related
    ENST00000369123.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    104936294..104940527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    106112313..106116542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)