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creb/atf-c transcription factor Ci-CREB/ATF-c [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100101830, updated on 21-Dec-2023

Summary

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Gene symbol
creb/atf-c
Gene description
transcription factor Ci-CREB/ATF-c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
ZC3H6; ci-creb/atf-c
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 1 NC_020166.2 (7313747..7321405, complement)

Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100186871 Neighboring gene uncharacterized LOC100183777 Neighboring gene uncharacterized LOC113474509 Neighboring gene transcription factor protein Neighboring gene single-strand selective monofunctional uracil DNA glycosylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020166.2 Chromosome 1 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
  2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
  3. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  4. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Ci-CREB/ATF-c
Names
zinc finger CCCH-type containing 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100133.1 → NP_001093603.1  transcription factor Ci-CREB/ATF-c

    See identical proteins and their annotated locations for NP_001093603.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210357
    UniProtKB/TrEMBL
    A0A1W3JQ27, Q4H3R5
    Conserved Domains (2) summary
    cd14690
    Location:241 → 295
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:58 → 98
    pKID; pKID domain

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020166.2 Reference KH Primary Assembly

    Range
    7313747..7321405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009864032.3 → XP_009862334.1  transcription factor Ci-CREB/ATF-c isoform X3

    See identical proteins and their annotated locations for XP_009862334.1

    UniProtKB/TrEMBL
    A0A1W3JJM4, Q4H3R3
    Conserved Domains (2) summary
    cd14690
    Location:228 → 282
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:45 → 85
    pKID; pKID domain

  2. XM_009864030.3 → XP_009862332.1  transcription factor Ci-CREB/ATF-c isoform X1

    See identical proteins and their annotated locations for XP_009862332.1

    UniProtKB/TrEMBL
    A0A1W3JQ27, Q4H3R5
    Conserved Domains (2) summary
    cd14690
    Location:241 → 295
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:58 → 98
    pKID; pKID domain

  3. XM_009864028.3 → XP_009862330.1  transcription factor Ci-CREB/ATF-c isoform X2

    See identical proteins and their annotated locations for XP_009862330.1

    UniProtKB/TrEMBL
    A0A1W3JV61, Q4H3R6
    Conserved Domains (2) summary
    cd14690
    Location:241 → 293
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:58 → 98
    pKID; pKID domain

  4. XM_009864029.3 → XP_009862331.1  transcription factor Ci-CREB/ATF-c isoform X2

    See identical proteins and their annotated locations for XP_009862331.1

    UniProtKB/TrEMBL
    A0A1W3JV61, Q4H3R6
    Conserved Domains (2) summary
    cd14690
    Location:241 → 293
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:58 → 98
    pKID; pKID domain

  5. XM_009864031.3 → XP_009862333.1  transcription factor Ci-CREB/ATF-c isoform X4

    See identical proteins and their annotated locations for XP_009862333.1

    UniProtKB/TrEMBL
    A0A1W3JJ18, Q4H3R4
    Conserved Domains (2) summary
    cd14690
    Location:228 → 280
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:45 → 85
    pKID; pKID domain
Nucleotide Protein
Heading Accession and Version

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