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SNHG8 small nucleolar RNA host gene 8 [ Homo sapiens (human) ]

Gene ID: 100093630, updated on 21-Jan-2020

Summary

Official Symbol
SNHG8provided by HGNC
Official Full Name
small nucleolar RNA host gene 8provided by HGNC
Primary source
HGNC:HGNC:33098
See related
Ensembl:ENSG00000269893
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00060; NCRNA00060
Expression
Ubiquitous expression in ovary (RPKM 73.3), prostate (RPKM 50.6) and 25 other tissues See more

Genomic context

See SNHG8 in Genome Data Viewer
Location:
4q26
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (118278762..118279823)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (119199917..119200978)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene N-deacetylase and N-sulfotransferase 3 Neighboring gene FKBP prolyl isomerase 4 pseudogene 1 Neighboring gene uncharacterized LOC105377392 Neighboring gene small nucleolar RNA, H/ACA box 24 Neighboring gene serine protease 12 Neighboring gene NADH:ubiquinone oxidoreductase subunit S5 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 60
  • small nucleolar RNA host gene (non-protein coding) 8
  • small nucleolar RNA host gene 8 (non-protein coding)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003584.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BC039555, CF124302
  2. NR_034010.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks a segment compared to variant 1.
    Source sequence(s)
    BC039555, BM845860
    Related
    ENST00000602819.6
  3. NR_034011.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks a segment compared to variant 1.
    Source sequence(s)
    BC039555, CD520851
    Related
    ENST00000602520.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    118278762..118279823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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