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TRK-TTT3-4 tRNA-Lys (anticodon TTT) 3-4 [ Homo sapiens (human) ]

Gene ID: 100049613, updated on 17-Aug-2024

Summary

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Official Symbol
TRK-TTT3-4provided by HGNC
Official Full Name
tRNA-Lys (anticodon TTT) 3-4provided by HGNC
Primary source
HGNC:HGNC:33256
See related
AllianceGenome:HGNC:33256
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAK3; TRK-TTT3-3
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Genomic context

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Location:
11q12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (59560335..59560407, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (59511258..59511330, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (59327808..59327880, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3365 Neighboring gene tRNA-Phe (anticodon GAA) 1-3 Neighboring gene RNA, U7 small nuclear 58 pseudogene Neighboring gene long intergenic non-protein coding RNA 2739 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:59332897-59333398 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:59333399-59333898 Neighboring gene tRNA-Phe (anticodon GAA) 2-1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:59343523-59344722 Neighboring gene oxysterol binding protein Neighboring gene microRNA 3162

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition. McCrate NE, et al. Nucleic Acids Res, 2006. PMID 17012271, Free PMC Article
  2. Analysis of a human gene cluster coding for tRNA(GAAPhe) and tRNA(UUULys). Doran JL, et al. Gene, 1987. PMID 3678837
  3. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The role of modified bases in preserving canonical tRNA anticodon structure was examined.
    Title: Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Lys (TTT) 3-4
  • tRNA-Lys-TTT-3-3
  • transfer RNA lysine 3 (anticodon UUU)
  • transfer RNA-Lys (TTT) 3-3
  • transfer RNA-Lys (TTT) 3-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    59560335..59560407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    59511258..59511330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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