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5930403N24Rik RIKEN cDNA 5930403N24 gene [ Mus musculus (house mouse) ]

Gene ID: 100040846, updated on 17-Aug-2024

Summary

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Official Symbol
5930403N24Rikprovided by MGI
Official Full Name
RIKEN cDNA 5930403N24 geneprovided by MGI
Primary source
MGI:MGI:2444171
See related
AllianceGenome:MGI:2444171
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16524
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 5930403N24Rik in Genome Data Viewer
Location:
10 B1; 10 19.49 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (37015528..37027981)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (37139532..37151985)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr10:36693912-36694212 Neighboring gene STARR-seq mESC enhancer starr_26337 Neighboring gene STARR-seq mESC enhancer starr_26339 Neighboring gene histone deacetylase 2 Neighboring gene STARR-seq mESC enhancer starr_26341 Neighboring gene STARR-seq mESC enhancer starr_26343 Neighboring gene STARR-seq mESC enhancer starr_26344 Neighboring gene STARR-positive B cell enhancer ABC_E6829 Neighboring gene myristoylated alanine rich protein kinase C substrate Neighboring gene STARR-seq mESC enhancer starr_26346 Neighboring gene STARR-seq mESC enhancer starr_26347 Neighboring gene STARR-seq mESC enhancer starr_26350 Neighboring gene STARR-seq mESC enhancer starr_26352 Neighboring gene predicted gene, 26535 Neighboring gene STARR-seq mESC enhancer starr_26353 Neighboring gene STARR-seq mESC enhancer starr_26354 Neighboring gene predicted gene, 31202 Neighboring gene predicted gene, 31330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166103.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133944

  2. NR_166104.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133944

  3. NR_166105.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133944

  4. NR_166106.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133944

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    37015528..37027981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177177.2: Suppressed sequence

    Description
    NM_177177.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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