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Snhg12 small nucleolar RNA host gene 12 [ Mus musculus (house mouse) ]

Gene ID: 100039864, updated on 26-Sep-2022

Summary

Official Symbol
Snhg12provided by MGI
Official Full Name
small nucleolar RNA host gene 12provided by MGI
Primary source
MGI:MGI:1916721
See related
Ensembl:ENSMUSG00000086290 AllianceGenome:MGI:1916721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310005L22Rik
Expression
Ubiquitous expression in limb E14.5 (RPKM 23.8), liver E14 (RPKM 21.4) and 28 other tissues See more
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Genomic context

See Snhg12 in Genome Data Viewer
Location:
4; 4 D2.3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (132035989..132038335)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (132308678..132311024)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 12 Neighboring gene RAB42, member RAS oncogene family Neighboring gene small nucleolar RNA, H/ACA box 16A Neighboring gene small nucleolar RNA, H/ACA box 44 Neighboring gene small nucleolar RNA, H/ACA box 61 Neighboring gene small nucleolar RNA, C/D box 99 Neighboring gene tRNA selenocysteine 1 associated protein 1 Neighboring gene regulator of chromosome condensation 1 Neighboring gene CRISPRi-validated cis-regulatory element for Rcc1 and Trnau1ap

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029468.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BY130275, CB201672
    Related
    ENSMUST00000153474.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    132035989..132038335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)