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Tbx3os1 T-box 3, opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 100039542, updated on 2-Nov-2024

Summary

Official Symbol
Tbx3os1provided by MGI
Official Full Name
T-box 3, opposite strand 1provided by MGI
Primary source
MGI:MGI:3780472
See related
Ensembl:ENSMUSG00000087516 AllianceGenome:MGI:3780472
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2301; Gm38692; AW549542
Summary
Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in adrenal adult (RPKM 4.4), limb E14.5 (RPKM 2.8) and 10 other tissues See more
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Genomic context

See Tbx3os1 in Genome Data Viewer
Location:
5 F; 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (119708194..119809573, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (119611253..119671508, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42016 Neighboring gene predicted gene, 31314 Neighboring gene enhancer eB upstream of Tbx3 Neighboring gene STARR-seq mESC enhancer starr_14219 Neighboring gene STARR-seq mESC enhancer starr_14220 Neighboring gene VISTA enhancer mm1177 Neighboring gene enhancer eA upstream of Tbx3 Neighboring gene predicted gene 16063 Neighboring gene predicted gene 16064 Neighboring gene STARR-seq mESC enhancer starr_14224 Neighboring gene STARR-seq mESC enhancer starr_14227 Neighboring gene STARR-seq mESC enhancer starr_14229 Neighboring gene T-box 3, opposite strand 2 Neighboring gene STARR-seq mESC enhancer starr_14230 Neighboring gene T-box 3 Neighboring gene predicted gene, 42017

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • Tbx3 opposite strand transcript 1

Clone Names

  • AC140675.3

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045702.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI413450, AK035112
    Related
    ENSMUST00000202307.2
  2. NR_166476.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC140675
    Related
    ENSMUST00000245826.2
  3. NR_172461.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133645, AC140675
    Related
    ENSMUST00000129108.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    119708194..119809573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)