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si:ch211-197l9.2 si:ch211-197l9.2 [ Danio rerio (zebrafish) ]

Gene ID: 100001876, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-197l9.2provided by ZNC
Official Full Name
si:ch211-197l9.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-369
See related
AllianceGenome:ZFIN:ZDB-GENE-091204-369
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within regulation of autophagy. Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-197l9.2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (30963099..30997169)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (31036591..31070638)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene Cdk5 and Abl enzyme substrate 2a Neighboring gene oxysterol binding protein-like 2a Neighboring gene selenoprotein I Neighboring gene hormonally up-regulated neu tumor-associated kinase homolog A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein SOGA1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    30963099..30997169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001919807.6 → XP_001919842.3  protein SOGA1-like

    UniProtKB/TrEMBL
    A0A8M1QQL1
    Conserved Domains (1) summary
    pfam11365
    Location:397 → 491
    DUF3166; Protein of unknown function (DUF3166)
Nucleotide Protein
Heading Accession and Version

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