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LOC100001805 PDZ domain-containing protein 4 [ Danio rerio (zebrafish) ]

Gene ID: 100001805, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100001805
Gene description
PDZ domain-containing protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (213444..249302)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (201169..234105)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SAM domain-containing protein 1A Neighboring gene uncharacterized LOC110438308 Neighboring gene ankyrin repeat and SAM domain-containing protein 1A Neighboring gene TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
PDZ domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    213444..249302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001341695.9 → XP_001341731.4  PDZ domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PV03
    Conserved Domains (1) summary
    cd00992
    Location:143 → 225
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_068216817.1 → XP_068072918.1  PDZ domain-containing protein 4 isoform X2

Nucleotide Protein
Heading Accession and Version

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