3I8B


Conserved Protein Domain Family
FGGY_D-XK_1

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cd07809: FGGY_D-XK_1 
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D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.
Statistics
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PSSM-Id: 198375
Aligned: 16 rows
Threshold Bit Score: 560.392
Created: 15-Jul-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 27 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:active site includes: Mg.ATP, phosphate ion, and D-xylulose binding sites, and catalytic residues conserved in the actin-like superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #### #                                                                   
3I8B_A         6 LVAGVDTSTQSCKVRVTDaeTGELVRFGQAKHPNGTSVD------PSYWWSAFQEAAEQAGGld---------dVSALAV 70  Bifidobacterium...
YP_001189952   1 MYLGIDCGTQGTKALVLDadGGQVRGAGSASHTLLSAANgrreqqPQQWLEAFEQATAQALAaagi----sgerILGIGV 76  Pseudomonas men...
P44401         1 MYIGIDCGTQGTKAIVLDsvQKKVIGVGYAKHELITQSNgrreqqPNWWIEALQQALQIALKqaknsphfspnlVKGIGI 80  Haemophilus inf...
NP_929226      3 LYAGIDCGTQSTKVIIVDsqKTPILGEGSSPHPIISDSNgrreqqVHWWTEALESAFSQAIEqagi----sgteIAALAV 78  Photorhabdus lu...
YP_572705      1 MYVGVDCGTQSTKVVIVDvqRAAILGEASRPHHLMEGDGgrreqdVNEWTQALTEAFHEAVAkagi----qareIRAIGV 76  Chromohalobacte...
YP_425342      1 MFLGIDCGTQGTKALILDd-SGAIRGVGHAAHRLIERESgareqdPAWWVQAAIGAVKGALAeagi----dgsaVRALAF 75  Rhodospirillum ...
NP_642103      3 LYVGLDVGTQSVKLVAYDpqDRAVVATIAAPMELISRDDgtreqqAQWWIDGIVHCFAQLDGeqr-------arVRGISV 75  Xanthomonas axo...
YP_639951      3 AVLGVDSSTQSCKVEIRDltTGELLGCGSAPHPPAFPPCse--qhPLDWVSAFVAATRTALAdcar-----ppaVCAISV 75  Mycobacterium s...
YP_001340847   1 MYLGVDCGTQGTKVVVLDaeKKNVIAQGYSEHELISAANgrreqePKWWIEAFLKAFQKAVEssgi----qpcdINAIGV 76  Marinomonas sp....
YP_001502140   3 IVAGVDCGTQGTKVILVDlgTSRVLAECSAPHELISESNgrreqqPSWWIDALVTAFEQAVStanv----dpkmIKAIGV 78  Shewanella peal...
Feature 1          ###                 #                                                         
3I8B_A        71 GGQQHGXVILDnQGNVIRDAXLWNDTSSAPQAAALIEKLGaapaqdgepedpiargkqRWVKAVGSSPVASYTLTKVAWV 150 Bifidobacterium...
YP_001189952  77 SGQQHGLVLLDeQGAVLRPAKLWCDTESSAENQRLLDHLGge---------------sGSLQRLGVAIAPGYTVSKLLWT 141 Pseudomonas men...
P44401        81 SGQQHGLVMLDkNDRPLYKAKLWCDTETATENDILIEKLGgq---------------tAVFEKLGIICQTGYTASKLSWF 145 Haemophilus inf...
NP_929226     79 SGQQHGFVPLDaEGHVLAPVKLWCDTETAAENQEIIDALGgt---------------qATLAQLGLMPQTGYTASKILWF 143 Photorhabdus lu...
YP_572705     77 SGQQHGMVALDaDGLPLHPAKLWCDTETALHNEALIEQLGgr---------------eGCLDKLGLVLQTGYTASKVAWL 141 Chromohalobacte...
YP_425342     76 SGQQHGLVVLGkDGQPLRPAKLWNDTETAAQNAVLVERLGga---------------eAWGERLGIVPLTGYTVSKLLWL 140 Rhodospirillum ...
NP_642103     76 SGQQHGFVPVAaDGSVTAPVKLWCDTSTALECDEIMAAVGga---------------aGSVAAAGNPIMAGYTASKLPWT 140 Xanthomonas axo...
YP_639951     76 AAQCHGLVLLDdHGNPLRAAKLWNDTTGAPALRALADRIGv----------------pSWIRRTGSAPTAAFTIAKLAWV 139 Mycobacterium s...
YP_001340847  77 SGQQHGLVVLDeKGEVIRPAKLWCDTETAPQNQQLLDALGgd---------------qGSIDAVGLVIATGYTASKLLWM 141 Marinomonas sp....
YP_001502140  79 SGQQHGLVALDsQGEVIRPAKLWCDTETAPENAQLLQMLGge---------------qACIDRLGLRVETGYTASKILWM 143 Shewanella peal...
Feature 1                                                                                        
3I8B_A       151 AENEPENVKKIAAICLPHDWLSWRIAGygpvaegedahleaLFTDRSDASGTIYYDAasNEYRRDLIAXVLEAaegakaa 230 Bifidobacterium...
YP_001189952 142 REQHPDVFARIAHILLPHDYLNHWLTGr-------------ACSEYGDASGTGYFNVrtRNWDVELLNFIDPSgr----- 203 Pseudomonas men...
P44401       146 RQNYPDKFANIRKIMLPHDYLNYWLTGk-------------FCTEFGDASGSGYFDVvkREWKREVFKYLAPEln----- 207 Haemophilus inf...
NP_929226    144 KKYRPELWEKLNAVLLPHDYLNYWLTGr-------------LVAEYGDASGTGLLNIrkREWDNQIAQFIDPDgr----- 205 Photorhabdus lu...
YP_572705    142 RETHPEAYRRIDTLLLPHDYLNFWLTGe-------------RVAECGDASGTGYFDTraREWRLDVFETLAPEls----- 203 Chromohalobacte...
YP_425342    141 KDNEPEAFARIDAILLPHDYLNFWATGr-------------RVAEAGDASGTAFFDIraRRWSEEVLALIDGGsgh---- 203 Rhodospirillum ...
NP_642103    141 RKHRPDAYAAMTTVMLPHDYVNFWLTGe-------------RFAEVGDASGTGWLDVrtRQWSERMLSAVDAQrd----- 202 Xanthomonas axo...
YP_639951    140 AEHEPEVLDRASTILLPHDYLTYWLTGr-------------PVTDRSEASGTGYFDVgtGQWITEYLDLAGGArd----- 201 Mycobacterium s...
YP_001340847 142 KQHEPENFSRIVHILLPHDYLNYWLTGn-------------CVAEFGDASGTGFMDVrtRQWSTQVLDIIDGRl------ 202 Marinomonas sp....
YP_001502140 144 KQHEPENFAKIAHILLPHDYLNFWLTGe-------------YCADFGDASGTGLFDVrnRCWNEHVCALIDPSgn----- 205 Shewanella peal...
Feature 1                                                    ##                  ###             
3I8B_A       231 qshaeaIVLPTVLGPRDAApVKADPa-iAGKNVEGGCLLAPGGGDNAXASLGLGXA-VGDVSISLGTSGVAAAISEn-PT 307 Bifidobacterium...
YP_001189952 204 ----lcNALPELIESDQPV-GRLRPqiaERLGLNPDAVVASGGGDNMMGAIGTGNIrPGAITMSLGTSGTLYAYSDq-PT 277 Pseudomonas men...
P44401       208 ----mdEVLPKLLSAEQKI-GVIKPeiaTLFGFNENVIVSTGGGDNMMGAIGTGNIrEGIATMSLGTSGTLYAYTQk-PL 281 Haemophilus inf...
NP_929226    206 ----lwNALPELVSAETCI-GTVRPeiaRRLGLSPTTKVASGGGDNMMAAIGTGNIiPGITTMSLGTSGTLFTYSDk-PI 279 Photorhabdus lu...
YP_572705    204 ----ptRVLPRLIDSREPV-GTVRPdlaRELGLADDVLVASGGGDNMMAAIGTGNIaPGMVTLSLGTSGTVYAHSDa-PV 277 Chromohalobacte...
YP_425342    204 ----laRALPELIGPDAIV-GPLRPeaaTALGLSPTCLVAAGGGDNMMGAIGTGNVrEGVVTLSIGTSAAVYSYSDt-PV 277 Rhodospirillum ...
NP_642103    203 ----lrEALPPLVDTGAVY-ALSDAa-aQALNLPAGVRVTTGGGDNMMAAIGTGNVvPGRLTMSLGTSGTLFAYADh-PV 275 Xanthomonas axo...
YP_639951    202 ----wpSMLPTVLAPCEPA-GALRPaaaEILGLDGDVVVAPGGGDQHAAYLGLGLR-DGDQYIGIGTSGVVATSSRt-PV 274 Mycobacterium s...
YP_001340847 203 -----vDALPNLIEAHQPA-GVIRPelaKSLGLNENVLVSSGGGDNMMGAIGTGNItPGVVTISLGTSGTLYAYSDksPM 276 Marinomonas sp....
YP_001502140 206 ----lfKALPELNRAEKAT-GVVIGqakERLGLSDNVVVSSGGGDNMMGAIGTGNVkNGIITMSLGTSGTIYTFSDk-PV 279 Shewanella peal...
Feature 1                           #      ## ##         ## #                                    
3I8B_A       308 YDLtGAVSGFADCtGHYLPLACTINGSRILDAGRAAlgvdYDELAKLAFASkpganGITLVPYFDGERTPnRPNATATFS 387 Bifidobacterium...
YP_001189952 278 VSPhAQVATFCSSsGGWLPLICTMNLTNASGLIQQLlaldIHSFDALVAQApigaeGLLLLPFFNGERVPaLPNARASLL 357 Pseudomonas men...
P44401       282 LNLpPMIANFCSSnNGWLPLVCVMNITSSNKQLMNLlnidIEELNQLAQQApiganGITILPFFNGERVPpLPNTKASIL 361 Haemophilus inf...
NP_929226    280 VADsEMIAGFCSSnNGWLPLICTMNVTSATTTIQKLfnmdIQTFNDTLNQSkpganGLMMLPFFNGERVPpLPHAKASLH 359 Photorhabdus lu...
YP_572705    278 EAEdAQVANFCAShGGWLPLICTMNVTSATTKVRELlgldLEAFGECVARAplgaeGVMALPFFNGERVPaLPHASASFV 357 Chromohalobacte...
YP_425342    278 VDPrGRVAAFCSSsGGWLPLVCTMNATNVTGRAATLvgddVGAIDRALADSppgaeGITVLPFLNGERTPdLPAARGSVL 357 Rhodospirillum ...
NP_642103    276 VDDeARWAAFCSSsGGWLPLICTMNCTVATEAVMRMfsitRDQTEAMIADTapgadGLVLLPFFNGERTPdLPAARGCLF 355 Xanthomonas axo...
YP_639951    275 FDPqGMVDGVADLtGGYLPLVSTLNAARVSDVAARLlgtdLVDLADLALSAge-tqGPVLVPFLDGERKPdRPDARGAFA 353 Mycobacterium s...
YP_001340847 277 LDH-ASVAPFCSSsNGWLPLICTMNLTGVMNQFRGLfsldILQMNEAIANTpigaeGITALPFLSGERVPaLPDANGSIL 355 Marinomonas sp....
YP_001502140 280 ELKhPSIANFCSSsNGWMPLICTMNVTSATSLVQDVlkmsLAEFNHSIEASqigagNISFLQFFNGERVPaLPDGKASIH 359 Shewanella peal...
Feature 1                                                     ###  #                             
3I8B_A       388 GXTlanTTRENLARAFVEGLLCSQRDCLELIRSLga-sITRILLIGGGAKSEAIRTLAPSILGXDVTRPATdEYVAIGAA 466 Bifidobacterium...
YP_001189952 358 GMDsdnLTRANLCRAVVEGTAFGLRYGLDLLRASgl-rSDDLRLIGGAAKSPVWRQVIADIMGMPLVCPQHtEAAALGAA 436 Pseudomonas men...
P44401       362 GLDssnFTRENLCRAMMESATFTLRYGLDLFRQAgl-kTSQIRLIGGGAKSSFWRQMIADVMNSEVVCLQEeEAAALGGA 440 Haemophilus inf...
NP_929226    360 NLNtsnMNQQNFILAAVESATYGLRFGIELFRKQgi-eINEIRLTGGGARSKKWRQIVADVMNTPVICVTNqEAAALGAA 438 Photorhabdus lu...
YP_572705    358 GMTslnTTQDNLCRAVVEGTTFGLRYGFERLGDLas-rASQVRLVGGGAKSPVWRQIVADVLDVDVICPRItEAAALGGA 436 Chromohalobacte...
YP_425342    358 GLSvtnMTAPNLLRAMTEGVSFGMLAGLKLVLAGr--qPERVFVIGGGARSGEWRKMIADASGAEIVVPMTeEAGSLGAA 435 Rhodospirillum ...
NP_642103    356 GMDlhnTTAAHFYRAAMEGATYSLRNGFDAFVAAgl-qFDTILLTGGGSKSAQWRQMVADIFNLQVVVPTQpEGAAFGAA 434 Xanthomonas axo...
YP_639951    354 DLTs-rTTRAELARAFVEGPLLSLMSARDSLRACgvdvSGAATAVGGGARSPATLQLLADLLDGEVTVLDTdEATARGAC 432 Mycobacterium s...
YP_001340847 356 GLNsdnLSAGNILRSVMEGTTFGLRYGMDLLRESgi-kSTELRLIGGGAKSPLWRQMIADVMNTKVVCPELpEAAAVGAA 434 Marinomonas sp....
YP_001502140 360 GLDaanFTRDNLVRSVVEGATFGLKYGLELLRGAgi-nIEQIRLIGGGAKSAHWRQMIADTMNCEVICPEVeEAAALGAA 438 Shewanella peal...
Feature 1                                                               
3I8B_A       467 RQAAWVLSGETEpp--------aWQLTIDGVETGe---PTEAVYEAYAKARGEGH 510 Bifidobacterium adolescentis ATCC 15703
YP_001189952 437 IQAAWCLTRAADrqaql--aelcERCVQLDTNTQt--qPDPARTAQYDAVYQRYR 487 Pseudomonas mendocina ymp
P44401       441 IQAMWANGEGELef-------lcETFIHLDENSKa--yPNLSQVKNYQNAYERYL 486 Haemophilus influenzae
NP_929226    439 IQAMWCDSLTEEkdkqmqlahfcQHFVHLDEETRt--iPTPETAALYDVFYQDYL 491 Photorhabdus luminescens subsp. laumondi...
YP_572705    437 IQAAWCDTLARGtgesl--saltERLVEVDLDTLt--rPRGEPVRRYQELYQRYR 487 Chromohalobacter salexigens DSM 3043
YP_425342    436 IQAQWAWSGESGapial--gdltDRAVRVDETKGa--lPRPERRAAYDEAFGRYR 486 Rhodospirillum rubrum ATCC 11170
NP_642103    435 LQALWACERADGgdaal--advvLEHLQVDDALAa--qPNPQHVAQYQQHYQTFL 485 Xanthomonas axonopodis pv. citri str. 306
YP_639951    433 VQAAAVATGRDVaglvd-lakqwQPAVRHRVSPRhtgrDLGALRARWAQLSASPL 486 Mycobacterium sp. MCS
YP_001340847 435 IQAQWCHASHLGkdvsl--ldlcDRYISIDASSSv--sPIPNNVTAYESAYQRYR 485 Marinomonas sp. MWYL1
YP_001502140 439 IQASWALKGRMDne-------iiEQLIALNEESRt--qPNCNNVAQYQVAYDRYI 484 Shewanella pealeana ATCC 700345

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